The location of the "scripts" folder is slightly confusing that, so I copied and pasted it to both "voxforge/" and "voxforge/auto". After doing that, it resolved the error in step 5 about not finding sample 1 in ../train/wav, and it seems to work correctly until step 13.

"

        Step 10 - Making Tied-State Triphones

==============================================================

making hmm13

  ERROR [+2662]  AssignStructure: cannot find tree for b state 2

 FATAL ERROR - Terminating program C:\cygwin\HTK\htk-3.3-windows-binary\htk\HHEd

.exe

making hmm14

  ERROR [+5010]  InitSource: Cannot open source file ./interim_files/tiedlist

  ERROR [+7010]  InitHMMSet: Can't open list file ./interim_files/tiedlist

  ERROR [+2321]  Initialise: MakeHMMSet failed

 FATAL ERROR - Terminating program C:\cygwin\HTK\htk-3.3-windows-binary\htk\HERe

st.exe

making hmm15

  ERROR [+5010]  InitSource: Cannot open source file ./interim_files/tiedlist

  ERROR [+7010]  InitHMMSet: Can't open list file ./interim_files/tiedlist

  ERROR [+2321]  Initialise: MakeHMMSet failed

 FATAL ERROR - Terminating program C:\cygwin\HTK\htk-3.3-windows-binary\htk\HERe

st.exe

cp: cannot stat `./interim_files/hmm15/hmmdefs': No such file or directory

cp: cannot stat `./interim_files/tiedlist': No such file or directory

Home@wheelin-7f76ffe ~/voxforge/auto/scripts

$

"

I looked into the hmm1 to hmm12 folder, and they all contain two files, but hmm13 to hmm15 contain no files within the folder. I'm assuming hmm13 had an error during construction, and it was never saved? I'm currently reading the manual version to see where it might be going wrong - the error seems a bit technical and indepth, though.